Delicious & Easy Keto Low-Carb Pumpkin Muffins: Your Go-To Fall Treat
Discover the ultimate guilt-free indulgence with these incredibly easy, keto friendly and gluten-free pumpkin muffins. Crafted with a perfect blend of nutrient-rich coconut flour and almond flour, and infused with aromatic pumpkin spice, these muffins are designed to satisfy your cravings without compromising your low-carb lifestyle. Whether you’re seeking a delightful healthy breakfast on a crisp morning or a comforting keto dessert after dinner, these muffins fit the bill perfectly. Elevate their flavor profile even further by topping them with a rich cream cheese frosting or folding in some decadent sugar-free chocolate chips for an extra touch of sweetness. Get ready to bake a batch of these irresistibly moist and flavorful muffins that will quickly become a seasonal favorite.

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While pumpkin flavors are synonymous with autumn, these remarkable low-carb pumpkin muffins are a delightful treat you can enjoy all year long. Their comforting warmth and spiced aroma make them an undeniable hit, especially during the fall holidays and gatherings. Imagine the joy of indulging in a moist, perfectly spiced muffin that aligns perfectly with your dietary goals, bringing warmth and satisfaction with every bite. This recipe isn’t just about cutting carbs; it’s about elevating your culinary experience with wholesome ingredients and incredible flavor.
If you’re a fan of the rich, earthy flavor of pumpkin, you’ll also adore my other keto creations like the Keto Pumpkin Pie and the Keto Pumpkin Bread. These recipes showcase the versatility of pumpkin in keto baking, offering delicious alternatives for traditional high-carb favorites.

Table of Contents
Understanding Pumpkin on a Keto Diet
One of the most common questions for those on a ketogenic diet, especially during the fall, is: “Is pumpkin keto-friendly?” The good news is, in moderation, pumpkin is indeed a fantastic addition to your low-carb meal plan. A mere ½ cup of pureed pumpkin contains approximately 25 calories and about 4.5 net carbs. In this particular recipe, we utilize ¾ cup of pumpkin puree, which is then distributed across 12 muffin servings. This careful portioning ensures that each muffin remains well within typical keto macro guidelines, allowing you to enjoy the rich flavor of pumpkin without concern.
Beyond its low-carb profile, pumpkin is celebrated as a nutritious keto vegetable. It’s an excellent source of dietary fiber, crucial for digestive health and maintaining satiety, which can be particularly beneficial for weight management. Additionally, pumpkin is packed with essential vitamins and minerals, including Vitamin A (in the form of beta-carotene, an antioxidant), Vitamin C, and potassium. Incorporating pumpkin into your diet offers not just flavor but a host of health benefits, making these muffins a truly wholesome treat.
Why Choose Keto Low-Carb Muffins?
Embracing a ketogenic or low-carb lifestyle often means reimagining your favorite comfort foods. These keto pumpkin muffins are a perfect example of how delicious and satisfying that journey can be. By replacing traditional wheat flour and sugar with almond flour, coconut flour, and zero-calorie sweeteners, we create a muffin that’s not only incredibly tasty but also supports your health goals.
The benefits extend beyond just carb count. These muffins are naturally gluten-free, making them suitable for individuals with gluten sensitivities or celiac disease. They provide a sustained energy release thanks to healthy fats and fiber, avoiding the blood sugar spikes and crashes associated with high-sugar baked goods. This makes them an ideal choice for a energizing breakfast or a satisfying snack that keeps you full and focused throughout your day. Plus, the combination of healthy fats from the flours and butter contributes to a richer, more decadent texture that often surprises those new to keto baking.

Mastering the Art of Keto Pumpkin Muffins
Crafting these delectable keto pumpkin muffins is a straightforward process, but a few key tips can elevate your baking experience and ensure perfect results every time. The recipe thoughtfully separates wet and dry ingredients, a common practice in baking to ensure even distribution and proper activation of leavening agents.
- Prepare Your Dry Mix: In a generously sized mixing bowl, combine the almond flour, coconut flour, pumpkin pie spice, your chosen zero-calorie sweetener, salt, and baking powder. Whisk these ingredients thoroughly to ensure they are well-integrated and lump-free. This step is crucial for an even rise and consistent flavor in your muffins.
- Combine Wet Ingredients: In a separate, smaller bowl, gently whisk together the pureed pumpkin, vanilla extract, beaten eggs, and melted butter. Ensure all these liquid components are fully blended before introducing them to the dry mix.
- Marry the Mixtures: Gradually pour the wet ingredient mixture into the bowl containing your dry ingredients. Mix just until combined. Overmixing can lead to tough muffins, so stop as soon as no dry streaks remain. The batter might appear thick, which is typical for keto baking due to the absorbent nature of coconut flour.
- Prepare for Baking: Line a standard 12-cup muffin tin with paper or silicone liners. This prevents sticking and makes for easy cleanup. Distribute the batter evenly among the muffin cups.
- Bake to Perfection: Place the muffin tin into a preheated oven and bake according to the recipe’s instructions. A good indicator of readiness is when a toothpick inserted into the center of a muffin comes out clean.
- Cool Down: Allow the muffins to cool completely in the tin on a wire rack before attempting to remove them or serve. Keto muffins can be delicate when warm, and cooling helps them firm up and prevents them from crumbling. Patience here yields the best results!
Paying attention to these details will ensure your keto pumpkin muffins are consistently moist, perfectly spiced, and wonderfully textured.


Achieving the Perfect Muffin Texture
One of the hallmarks of a truly great muffin is its texture, and these keto pumpkin muffins deliver beautifully. They are far from dense; instead, they boast an exceptionally moist and tender crumb, primarily due to the generous inclusion of pumpkin puree. Pumpkin not only imparts its signature flavor but also acts as a natural moistening agent in baked goods. However, working with a highly moist ingredient like pumpkin in keto baking requires careful consideration of your flour choices.
This recipe intelligently incorporates both almond flour and coconut flour, each playing a distinct role in achieving the ideal texture. Almond flour provides a tender, cake-like consistency and a mild, nutty flavor, while coconut flour is renowned for its incredible absorbency. Given the high moisture content from the pumpkin puree, coconut flour is added to effectively ‘dry up’ the batter just enough to prevent the muffins from becoming overly soggy or gummy. Despite coconut flour’s drying properties, the muffins retain their wonderful moistness after baking, striking a perfect balance between light and rich. This combination ensures a muffin that is satisfyingly soft, wonderfully moist, and never heavy.

Customizing Your Keto Muffins: Toppings & Mix-ins
While these keto pumpkin muffins are absolutely delicious on their own, they also serve as a fantastic canvas for customization. Personalizing your muffins allows you to experiment with flavors and textures, making each batch uniquely yours.
For an extra layer of decadence, consider folding in about a half cup of Lily’s Unsweetened Chocolate Chips into the batter before baking. These sugar-free chocolate chips melt beautifully, creating pockets of rich, dark chocolate goodness that perfectly complement the pumpkin spice. Alternatively, for a touch of crunch and healthy fats, sprinkle pumpkin seeds (pepitas) on top of the batter before baking. Other wonderful keto-friendly mix-ins could include chopped pecans or walnuts for added texture and nutrition.
When it comes to toppings, the possibilities are equally exciting. A generous dollop of sugar-free cream cheese frosting (which you can easily make with cream cheese, keto sweetener, and a touch of vanilla) transforms these muffins into a truly luxurious dessert. For a simpler yet satisfying option, spread your cooled muffins with a spoonful of keto friendly nut butter (almond or peanut butter) when served. A light dusting of cinnamon or extra pumpkin pie spice can also enhance their aromatic appeal. Don’t be afraid to get creative and discover your favorite combinations!

Storing and Serving Your Keto Muffins
Proper storage is key to maintaining the freshness and deliciousness of your homemade keto pumpkin muffins. After baking and allowing them to cool completely, transfer the muffins to an airtight container. Stored this way in the refrigerator, they will remain fresh and moist for up to a week. This makes them an excellent option for meal prepping healthy breakfasts or snacks throughout your busy week.
For longer-term storage, these muffins freeze beautifully. Place them in sealable freezer bags or an airtight container, ensuring they are well-wrapped to prevent freezer burn. They can be stored in the freezer for up to 3 months. When you’re ready to enjoy one, simply defrost it at room temperature for an hour or two. If you’re in a hurry, a quick zap in the microwave will warm it through and restore its fresh-baked feel. Whether enjoyed chilled, at room temperature, or slightly warm, these muffins are a versatile and convenient treat.


More Keto Pumpkin Delights
If you’ve fallen in love with these keto pumpkin muffins, you’re in for a treat! The world of keto pumpkin recipes is vast and delicious. Expand your low-carb baking repertoire with these other amazing pumpkin-infused dishes:
- Keto Pumpkin Bread
- Keto Pumpkin Spice Latte
- Keto Pumpkin Ice Cream
- Keto Pumpkin Pie
- Keto Pumpkin Spice Fat Bombs
- Pumpkin Crisp
- No Bake Pumpkin Cheesecake Bars
- Creamy Pumpkin Soup with Canned Pumpkin
Explore More Keto Desserts
Satisfy your sweet tooth while staying in ketosis with these fantastic low-carb dessert recipes. From cookies to cakes, there’s something here for every craving:
- Keto Cheesecake
- Keto Chocolate Chip Cookies
- Keto Peanut Butter Cookies
- Keto Avocado Brownies
- Keto Cream Cheese Sugar Cookies
- Keto Lemon Bars
- Keto Pumpkin Spice Fat Bombs
- Keto Pound Cake

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Easy, Keto Low-Carb Pumpkin Muffins
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Ingredients
- ¾ cup blanched almond flour
- ¾ cup coconut flour
- ½ cup zero calorie sweetener Use Discount Code STAYSNATCHED for savings.
- 1 teaspoon baking powder
- ½ teaspoon salt
- 2 teaspoons pumpkin pie spice
- ¾ cup 100% pureed pumpkin
- 4 eggs (beaten)
- 1 teaspoon vanilla extract
- ½ cup unsalted butter (melted)
Instructions
- Preheat oven to 350 degrees F (175 degrees C).
- Combine the dry ingredients (almond flour, coconut flour, sweetener, salt, and baking powder) in a large mixing bowl. Whisk well to ensure no lumps.
- In a smaller separate bowl, combine the wet ingredients (pureed pumpkin, eggs, vanilla, and melted butter). Mix well until smooth.
- Carefully pour the wet mixture into the large mixing bowl with the dry ingredients.
- Stir gently until just combined. Be careful not to overmix, which can lead to tough muffins.
- Line a muffin tin with muffin/cupcake liners for easy removal.
- Divide the batter evenly among the 12 muffin cups.
- Bake for 20-25 minutes, or until a toothpick inserted into the center of a muffin comes out clean. Mine were perfectly baked around 23 minutes.
- Allow the muffins to cool completely on a wire rack before serving.
Video Guide
Watch the full recipe tutorial here!
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Nutrition (displayed with net carbs)
Serving: 1 muffin
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Calories: 176kcal
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Carbohydrates: 4g
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Protein: 5g
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Fat: 14g
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Nutrition Data: Macros are provided as a courtesy and should not be construed as a guarantee. This information is calculated using MyFitnessPal.com. To obtain the most accurate nutritional information in a given recipe, you should calculate the nutritional information with the actual ingredients used in your recipe, using your preferred nutrition calculator. You are solely responsible for ensuring that any nutritional information provided is accurate, complete, and useful.
